I have a problem with the htaccess file conflicting with other folder within my site. My hosting allows multiple domains to be registered and pointed to subfolders within the main htdocs.
Maindomain.com >> htdocs
secondarydomain.com >> htdocs/folder
and so on. What is happening is that after installtion the htaccess file is screwing with all the secondary domains and causing server 500 errors. is there a way that I can alter the htaccess file to exclude certain folders...